Active deployments, research platforms, and select portfolio work.
A vertically integrated bioinformatics agency serving the St. Louis biotech ecosystem. Infrastructure, analysis, and talent — from a scientist who speaks the language.
Bioinformatics · Community · Web
A translational chemistry laboratory exploring new synthetic methodology in organic chemistry.
Web Development · DNS · Go
A Snakemake pipeline for DAF-seq (deaminase-assisted footprinting) data. Takes raw sequencing reads to per-haplotype chromatin accessibility tracks ready to load into a genome browser.
Snakemake · Python · Genomics · Epigenomics · Pipeline
Benchmarking suite for DNA methylation detection methods. CNN/PyTorch framework for methylation classification from bisulfite sequencing data, benchmarked against traditional statistical approaches.
Bioinformatics · PyTorch · Machine Learning · Genomics
A command-line tool for pulling DNA sequence embeddings out of Evo 2, the genomic foundation model. Point it at sequences, get back embedding vectors for downstream ML.
Python · CLI · Machine Learning · Genomics · Foundation Models
Cloud-native tumor-normal sequencing pipeline for the NIH Common Fund's Somatic Cell Genome Editing program. Built with Nextflow DSL2 and DRAGEN hardware acceleration on AWS.
Nextflow · AWS Batch · DRAGEN · nf-core · Genomics
Machine learning-based pose estimation system for tracking zebrafish behavior in custom experimental rigs, enabling high-throughput behavioral analysis.
Python · DeepLabCut · Computer Vision · Pose Estimation
Transformer-based language models applied to biological sequence classification, exploring gene function prediction and regulatory element annotation.
BERT · Transformers · NLP · PyTorch · Genomics