Index

Projects

Active deployments, research platforms, and select portfolio work.

Active Deployments

Live
Bioinformatics

STL BCB Collective

A community platform for the St. Louis Bioinformatics & Computational Biology collective. Connecting researchers, developers, and scientists in the greater St. Louis area.

Bioinformatics Community Web
Live
Monitoring

Gateway Watch

A monitoring and analytics platform tracking real-time data streams. Built for reliability and performance in data-dense environments.

Monitoring Analytics TypeScript
Live
Security

DefLab

A defense and research laboratory platform for exploring computational methods in security analysis and threat modeling.

Security Research Python
Initializing...
Bioinformatics

EpiBench Lite

An interactive bioinformatics demo for epigenetic analysis. Upload genomic data, run methylation predictions, and visualize results in real-time.

Bioinformatics Python Machine Learning FastAPI

Research & Select Projects

Research
Nextflow

nf-core/scge Pipeline

Cloud-native tumor-normal sequencing pipeline for the NIH Common Fund's Somatic Cell Genome Editing program. Built with Nextflow DSL2 and DRAGEN hardware acceleration on AWS.

Nextflow AWS Batch DRAGEN nf-core Genomics
Research
Python

DeepLabCut Imaging Pipeline

Machine learning-based pose estimation system for tracking zebrafish behavior in custom experimental rigs, enabling high-throughput behavioral analysis.

Python DeepLabCut Computer Vision Pose Estimation
Research
BERT

BERT for Sequence Classification

Transformer-based language models applied to biological sequence classification, exploring gene function prediction and regulatory element annotation.

BERT Transformers NLP PyTorch Genomics