Active deployments, research platforms, and select portfolio work.
A vertically integrated bioinformatics agency serving the St. Louis biotech ecosystem. Infrastructure, analysis, and talent — from a scientist who speaks the language.
A translational chemistry laboratory exploring new synthetic methodology in organic chemistry.
A Snakemake pipeline for DAF-seq (deaminase-assisted footprinting) data. Takes raw sequencing reads to per-haplotype chromatin accessibility tracks ready to load into a genome browser.
A command-line tool for pulling DNA sequence embeddings out of Evo 2, the genomic foundation model. Point it at sequences, get back embedding vectors for downstream ML.
Benchmarking suite for DNA methylation detection methods. CNN/PyTorch framework for methylation classification from bisulfite sequencing data, benchmarked against traditional statistical approaches.
Cloud-native tumor-normal sequencing pipeline for the NIH Common Fund's Somatic Cell Genome Editing program. Built with Nextflow DSL2 and DRAGEN hardware acceleration on AWS.
Machine learning-based pose estimation system for tracking zebrafish behavior in custom experimental rigs, enabling high-throughput behavioral analysis.
Transformer-based language models applied to biological sequence classification, exploring gene function prediction and regulatory element annotation.