Lab
live
The Lab
Live demos running on a FastAPI backend at api.andrewbonney.cloud. Static frontend, real computation.
Research Context Dana-Farber · Data Science 2026 — Present
PI Nicoletta Cieri, MD, PhD
Institution Dana-Farber Cancer Institute — Department of Data Science
Focus Graft-versus-host disease · Allogeneic stem cell transplantation · Minor histocompatibility antigens · Immunogenomics
My Work Algorithms and testing frameworks for studying GvHD in hematopoietic stem cell transplantation
Previously WashU Spencer Lab 2024—2026
PI David Spencer, MD, PhD
Institution Washington University School of Medicine
Focus AML epigenetics · DNA methylation · 3D genome architecture · HOX gene regulation · Single-cell multi-omics
My Work Nextflow pipelines (RNA-seq, WGBS, Hi-C) · CNN/PyTorch methylation prediction · PB-scale AWS ETL
Live Sites
deployed
Demo 01 live
DNA Sequence Analyzer
Paste any DNA sequence and run a 4-process Nextflow-style pipeline live. Computes GC content, reverse complement, k-mer frequencies, and scans for restriction enzyme cut sites.
Input Sequence (ATCGN, 10–500 bp) 0 / 500 bp
Presets:
View Pipeline Source dna_analysis.nf ▼
Nextflow DSL2 · requires Python 3.8+
Download .nf ↗
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GitHub Activity
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via api.andrewbonney.cloud · public repos only
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